Dmitrii Smirnov, Ph.D

Dmitrii Smirnov, Ph.D

Khrameeva lab, Skoltech

Publications

Published papers

  1. Dmitrii Smirnov, Ekaterina Eremenko, Daniel Stein, Shai Kaluski, Weronika Jasinska, Claudia Cosentino, Barbara Martinez-Pastor, Yariv Brotman, Raul Mostoslavsky, Ekaterina Khrameeva, and Debra Toiber. “SIRT6 is a key regulator of mitochondrial function in the brain” Cell Death & Disease 14(1):35, January 2023. doi: 10.1038/s41419-022-05542-w.

  2. Smirnov DN, Shekhovtsov SV, Shipova AA, Gazizova GR, Shagimardanova EI, Bulakhova NA, Meshcheryakova EN, Poluboyarova TV, Khrameeva EE, Peltek SE, Berman DI. “De novo assembly and analysis of the transcriptome of the Siberian wood frog Rana amurensis” Vavilovskii Zhurnal Genet Selektsii, 26(1):109-116, Feb 2022. doi: 10.18699/VJGB-22-07.

  3. Dmitrii Smirnov, Pavel Mazin, Maria Osetrova, Elena Stekolshchikova, and Ekaterina Khrameeva. “The Hitchhiker’s Guide to Untargeted Lipidomics Analysis: Practical Guidelines” Metabolites, 11(11):713, October 2021. doi: 10.3390/metabo11110713.

  4. Gal Mazor, Dmitri Smirnov, Hila Ben David, Ekaterina Khrameeva, Debra Toiber, and Barak Rotblat. “TP73-AS1 is induced by YY1 during TMZ treatment and highly expressed in the aging brain” Aging, 13(11):14843–14861, June 2021. doi: 10.18632/aging.203182.

  5. Smirnov D, Pikunov A, Syunyaev R, Deviatiiarov R, Gusev O, Aras K, Gams A, Koppel A, Efimov IR. “Genetic algorithm-based personalized models of human cardiac action potential” PLoS One, 11;15(5):e0231695 May 2020. doi: 10.1371/journal.pone.0231695.

Preprints

  1. Dmitrii N. Smirnov, Anna D. Kononkova, Debra Toiber, Mikhail S. Gelfand, Ekaterina E. Khrameeva. “optimalTAD: annotation of topologically associating domains based on chromatin marks enrichment” BioRxiv January 2024. doi: 10.1101/2023.03.06.531254.

  2. Debra Toiber, Dmitrii Kruikov, Ekaterina Eremenko, Dmitrii Smirnov, Daniel Stein, Alexandra Tsitrina, Anastasia Golova, Monica Einav, Ekaterina Khrameeva. “Nuclear expansion drives chromatin structure remodeling in aging neurons” Research Square, Dec 2023. doi: 10.21203/rs.3.rs-3691075/v1.

Conference papers

  1. Smirnov DN, Belyakova GA, Syunyaev RA, Gusev OA, Deviatiiarov RM, Efimov IR. “Personalized ionic models of cardiomyocytes on the basis of molecular data and genetic algorithms” J Bioenerg Biomembr (2018). doi: 10.1007/s10863-018-9775-7.

  2. R.A. Syunyaev, G.A. Belyakova , D.N. Smirnov and I.R. Efimov. “Personalized Mathematical Models of Human Cardiomyocytes Electrophysiology” VOLGA NEUROSCIENCE MEETING (2018). link

  3. D. Smirnov, M. Zhukova, R. Syunyaev. “Genetic algorithms application for searching the optimal set of parameters for electrical activity models of cardiomyocytes” 49th Mathematics.Computing.Education International Conference (2018). link

  4. D. Smirnov, R. Syunyaev. “Genetic algorithms application for searching the optimal set of parameters for electrical activity models of cardiomyocytes” 59th MIPT Scientific Conference (2016). pdf in russian